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PhD Student
PhD project: Mechanisms at the nexus of membrane protein biogenesis and degradation at the endoplasmic reticulum Full-time NEW
Membrane proteins are essential for cellular functions, but the mechanisms ensuring their proteostasis are incompletely understood. Novel protein insertases and intramembrane chaperones have been recently discovered, but their client spectrum and quality control mechanisms have not been understood. We have identified a rhomboid family pseudoprotease UBAC2 as a proximity neighbour of endoplasmic reticulum (ER) insertases, chaperones and ribosomal proteins. UBAC2 is homologous to derlins, the key components of the ER-associated degradation (ERAD) retrotranslocons, and it has been associated with ERAD and lipid metabolism. We will use proteomics and cell biology to characterize the interactome and client spectrum of UBAC2, to understand its role at the nexus of translation and degradation at the ER. The approach will include work in cultured cells, genetics (CRISPR and RNAi), proteomics, and cell biological techniques ranging from microscopy to in vitro biochemical approaches, aiming to elucidate basic principles of membrane protein homeostasis in mammalian cells. The aim of the project is to understand the role of the rhomboid family pseudoprotease UBAC2
in membrane protein biogenesis or degradation at the endoplasmic reticulum and by these means uncover more general principles guiding membrane proteostasis.
University: Faculty of Science, Charles University
Group: Kvido Stříšovský Group / Intramembrane Proteolysis and Biological Regulation
Tutor: Ing. Kvido Stříšovský, PhD
Field of study: Cell biology, Biochemistry
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